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Archive
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4 accepted papers
03-07-2019 -
Statistics for Omics course (VUmc/BioSB)
07-02-2019 -
Publication: fused ridge in JMLR
06-03-2020 -
Publication: Ridge estimation of network models from time-course omics data.
10-09-2018 -
Vacancy: Biostatistician / Statistical machine learner
14-01-2020 -
Paper accepted: starnet
18-05-2020
Publication: Ridge estimation of network models from time-course omics data.
10-09-2018
Our paper on ridge estimation of network models from time-course omics data appeared online in the Biometrical Journal. It extends previous work on the penalized estimation of the first order vector autoregressive model, which captures temporal and contemporaneous relations among the variates of a system (e.g. pathway). The new work extends this to allow for second order time effects, a group factor, or time-varying covariates. Application to in vitro cervical cancer data yields an attanuated picture HPV-induced cellular transformation. Read more.